Lab & Diagnostic Orders & Results — Integration Document

Documentation Index

Fetch the complete documentation index at: https://docs.encoreos.io/llms.txt

Use this file to discover all available pages before exploring further.

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Overview

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Integration Matrix

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Internal Integration Points

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CL-01: Patient Chart Display

• Chart queries cl_orders and cl_order_results filtered by chart_id and organization_id
• Results display includes abnormal flagging with color-coded indicators
• Trending view uses result_value_numeric for recharts time-series rendering

// Orders for a chart
const { data: orders } = await supabase
  .from('cl_orders')
  .select('*, cl_order_results(*)')
  .eq('organization_id', orgId)
  .eq('chart_id', chartId)
  .is('deleted_at', null)
  .order('created_at', { ascending: false });

// Trending query for a specific LOINC code
const { data: trends } = await supabase
  .from('cl_order_results')
  .select('result_value_numeric, created_at')
  .eq('organization_id', orgId)
  .eq('chart_id', chartId)
  .not('result_value_numeric', 'is', null)
  .order('created_at', { ascending: true });

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CL-05 → CL-08 → CL-09: Monitoring Protocol Flow

• CL-05 owns medication data and monitoring_protocol definitions
• CL-08 evaluates monitoring gaps using CDS rules and generates reminder alerts
• CL-09 provides the order entry action (clinician responds to CL-08 alert by creating an order)

CL-05: cl_medications.monitoring_protocol = { frequency_days: 90, loinc_codes: ['2823-3'] }
  ↓ (evaluated at chart_open)
CL-08: CDS engine checks last order date for loinc_code vs frequency_days
  ↓ (gap detected)
CL-08: Creates cl_cds_alerts with type='monitoring', action_url='/cl/chart/{id}/orders/new?loinc=2823-3'
  ↓ (clinician clicks alert)
CL-09: Order entry pre-populated with LOINC code from alert

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CL-08: Abnormal Result Alerts

• CL-08 CDS engine evaluates the result
• Creates cl_cds_alerts with severity based on abnormal_flag:
  • critical_low/critical_high → severity: critical
  • low/high → severity: moderate
  • abnormal → severity: low

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PF-10: Notifications

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PF-70: LOINC Code Library

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Event Contracts

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cl_lab_order_created

{
  event_type: 'cl_lab_order_created';
  organization_id: string;   // UUID
  timestamp: string;          // ISO 8601
  order_id: string;           // UUID
  chart_id: string;           // UUID
  ordering_provider_id: string; // UUID
  loinc_code: string | null;
  priority: 'stat' | 'urgent' | 'routine';
  lab_id: string | null;      // UUID — reference lab
}

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cl_lab_result_received

{
  event_type: 'cl_lab_result_received';
  organization_id: string;   // UUID
  timestamp: string;          // ISO 8601
  result_id: string;          // UUID
  order_id: string;           // UUID
  chart_id: string;           // UUID
  abnormal_flag: 'normal' | 'low' | 'high' | 'critical_low' | 'critical_high' | 'abnormal';
  result_code: string | null;
}

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cl_lab_result_reviewed

{
  event_type: 'cl_lab_result_reviewed';
  organization_id: string;   // UUID
  timestamp: string;          // ISO 8601
  result_id: string;          // UUID
  order_id: string;           // UUID
  chart_id: string;           // UUID
  reviewed_by: string;        // UUID
}

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External Integration: Lab Result Ingestion

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Architecture

External Lab System (Quest, LabCorp, local)
  ↓ (HTTPS POST with API key)
Edge Function: cl-lab-result-ingestion
  ↓ (parse HL7v2 ORU or FHIR DiagnosticReport)
  ↓ (validate org_id + lab API key)
  ↓ (map to cl_order_results rows)
  ↓ (insert via service-role client)
  ↓ (publish cl_lab_result_received event)
  ↓ (return ACK/NAK response)

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Edge Function: cl-lab-result-ingestion

// Option A: FHIR DiagnosticReport (JSON)
POST /functions/v1/cl-lab-result-ingestion
Content-Type: application/json
X-Lab-API-Key: <api_key>

{
  "format": "fhir",
  "organization_id": "<uuid>",
  "resource": { /* FHIR DiagnosticReport */ }
}

// Option B: HL7v2 ORU (text)
POST /functions/v1/cl-lab-result-ingestion
Content-Type: text/plain
X-Lab-API-Key: <api_key>
X-Organization-ID: <uuid>

MSH|^~\&|LAB|...
PID|...
OBR|...
OBX|...

• Custom segment parser in edge function (no external library dependency)
• Parse MSH, PID, OBR, OBX segments
• Map OBX-3 (LOINC) → result_code, OBX-5 → result_value/result_value_numeric, OBX-6 → result_units, OBX-7 → reference_range, OBX-8 → abnormal_flag

• DiagnosticReport.result[] → individual cl_order_results rows
• Observation.code.coding[0].code → result_code (LOINC)
• Observation.valueQuantity.value → result_value_numeric
• Observation.interpretation → abnormal_flag

• 200 + ACK on success
• 400 + NAK on validation failure
• 401 on invalid API key
• 500 + error on server failure

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Security Controls

1. TLS 1.2+ required for all inbound connections
2. API key validation against cl_reference_labs.connection_config
3. Service-role client for database operations (bypasses RLS)
4. Audit logging — all ingested results logged to pf_audit_logs with source lab identifier
5. PHI handling — result values stored only in RLS-protected tables; no PHI in edge function logs
6. Rate limiting — per-lab rate limiting via pf_rate_limit_buckets

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Security Patterns

• All CL-09 tables use composite FKs (organization_id, entity_id) for tenant isolation
• UPDATE RLS policies include WITH CHECK to prevent organization_id modification
• DELETE is blocked on cl_orders and cl_order_results (soft delete via deleted_at)
• Lab ingestion uses SECURITY DEFINER functions when inserting via service-role to maintain audit trails

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Related Documents

• Spec: specs/cl/specs/CL-09-lab-diagnostic-orders-results.md
• Task Breakdown: specs/cl/tasks/CL-09-TASKS.md
• CL-05 Integration: docs/architecture/integrations/CL-05-medication-management-INTEGRATION.md
• CL-08 Integration: docs/architecture/integrations/CL-08-clinical-decision-support-INTEGRATION.md
• Event Contracts: docs/architecture/integrations/EVENT_CONTRACTS.md
• CROSS_CORE_INTEGRATIONS: docs/architecture/integrations/CROSS_CORE_INTEGRATIONS.md